Publications

Recent publications


4  (of 4 published available) for dje2 with keyword CPG clear keyword filter. (source: University of St Andrews PURE)
Please click title of any item for full details.

2017 (29/9)
eLife
vol.6 
(Article)
CpG and UpA dinucleotides in both coding and non-coding regions of echovirus 7 inhibit replication initiation post-entry
Jelke J. Fros, Isabelle Dietrich, Kinda Alshaikhahmed, Tim C. Passchier, David John Evans, Peter Simmonds 
2015 (14/7)
Proceedings of the National Academy of Sciences of the United States of America
vol.112 pp.E3633-E3634
(Letter)
Attenuation of dengue (and other RNA viruses) with codon pair recoding can be explained by increased CpG/UpA dinucleotide frequencies
Peter Simmonds, David John Evans, Martin Denis Ryan 
2014 (9/12)
eLife
vol.3 
(Article)
RNA virus attenuation by codon pair deoptimisation is an artefact of increases in CpG/UpA dinucleotide frequencies
N. J. Atkinson, David John Evans, Martin Denis Ryan, P. Simmonds 
Keywords: Escherichia-coli, Context analysis, Genome, Scale, CPG, Influenza, Selection, Bias, UPA, Replication
2014 (7/4)
Nucleic Acids Research
vol.42 pp.4527-4545
(Article)
The influence of CpG and UpA dinucleotide frequencies on RNA virus replication and characterization of the innate cellular pathways underlying virus attenuation and enhanced replication
Nicky J. Atkinson, Jeroen Witteveldt, David John Evans, Peter Simmonds 
Keywords: Hepatitis-C-virus, Protein-synthesis, Codon usage, Coxsackievirus replication, Mutational robustness